Defining and benchmarking open problems in single-cell analysis

• Luecken, Malte D. ORCID Institute of Computational Biology, Helmholtz Munich, Germany
• Gigante, Scott ORCID Immunai, New York, USA
• Burkhardt, Daniel B. NVIDIA, Santa Clara, CA, USA
• Cannoodt, Robrecht ORCID Data Intuitive, Lebbeke, Belgium
• Strobl, Daniel C. Institute of Clinical Chemistry and Pathobiochemistry, TUM, Munich, Germany
• Markov, Nikolay S. Feinberg School of Medicine, Northwestern University, USA
• Zappia, Luke ORCID TUM, Munich, Germany
• Palla, Giovanni ORCID TUM, Munich, Germany
• Lewis, Wesley Yale University, USA
• Dimitrov, Daniel Heidelberg University, Germany
• Vinyard, Michael E. Harvard University, USA
• Magruder, D. S. Yale University, USA
• Mueller, Michaela F. Helmholtz Munich, Germany
• Andersson, Alma ORCID Genentech Inc, USA
• Dann, Emma ORCID Wellcome Sanger Institute, UK
• Qin, Qian ORCID Broad Institute of MIT and Harvard, USA
• Otto, Dominik J. ORCID Fred Hutchinson Cancer Center, Seattle, USA
• Klein, Michal Apple, Paris, France
• Botvinnik, Olga Borisovna Chan Zuckerberg Biohub, USA
• Deconinck, Louise ORCID Ghent University / VIB, Belgium
• Waldrant, Kai ORCID Data Intuitive, Belgium
• Yasa, Sai Nirmayi Data Intuitive, Belgium
• Szałata, Artur ORCID TUM, Munich, Germany
• Benz, Andrew Cellarity Inc, USA
• Li, Zhijian ORCID Broad Institute / MGH, USA
• Rieck, Bastian ORCID University of Fribourg
• Ahlmann-Eltze, Constantin Genome Biology Unit, EMBL, Heidelberg, Germany
• da Veiga Beltrame, Eduardo Mohamed bin Zayed University of AI (MBZUAI), Abu Dhabi, UAE
• Bravo González-Blas, Carmen VIB Center for Brain & Disease Research, Leuven, Belgium
• Chen, Ann T. Orion Medicines, Foster City, CA, USA
• DeMeo, Benjamin Department of Biomedical Informatics, Harvard University, Cambridge, MA, USA
• Ergen, Can UC Berkeley, USA
• Floc’hlay, Swann VIB Center for Brain & Disease Research, Leuven, Belgium
• Gayoso, Adam ORCID Center for Computational Biology, University of California, Berkeley, USA
• Hicks, Stephanie ORCID Johns Hopkins University, USA
• Ji, Yuge Institute of Computational Biology, Helmholtz Munich, Germany
• Kleshchevnikov, Vitalii Wellcome Sanger Institute, Cambridge, UK
• La Manno, Gioele ORCID EPFL, Switzerland
• Lombardo, Maximilian G. Chan Zuckerberg Initiative, USA
• Lopez, Romain ORCID Genentech, USA
• Righelli, Dario ORCID University of Padua, Italy
• Sarkar, Hirak Princeton University, USA
• Svensson, Valentine ORCID Altos Labs, USA
• Tong, Alexander Université de Montréal / Mila, Canada
• Xing, Galen UC Berkeley, USA
• Xu, Chenling UC Berkeley, USA
• Bloom, Jonathan M. MIT, USA
• Pisco, Angela Oliveira Insitro / CZ Biohub, USA
• Saez-Rodriguez, Julio Heidelberg University, Germany
• Wulsin, Drausin Immunai, New York, USA
• Pinello, Luca ORCID Massachusetts General Hospital, USA
• Saeys, Yvan ORCID VIB Center for Inflammation Research, Belgium
• Theis, Fabian J. ORCID Helmholtz Munich, Germany
• Krishnaswamy, Smita ORCID Yale University, USA

single-cell analysis

open problems

computational biology

survey