Plant Molecular Biology Supplemental material "Dokládal L, Benková E, Honys D, Dupľáková N, Lee L-Y, Gelvin SB and Sýkorová E* An armadillo-domain protein participates in a telomerase interaction network " "* Corresponding author: Eva Sýkorová, Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, CZ-61265 Brno, Czech Republic, evin@ibp.cz, tel: +420 541517199" Table S3. Tissue-specific gene expression in arm mutant plants. leaves seedlings buds AGI number Name arm-1 SD No. of samples p-value stars arm-2 SD No. of samples p-value stars arm-1 SD No. of samples p-value stars arm-1 SD No. of samples p-value stars At5g16850 AtTERT 1.08 0.31 2 0.8205 ns 1.13 0.34 2 0.739 ns 2.44 0.18 3 0.0008 ** 0.93 0.11 2 0.5897 ns At3g48190 ATM 0.82 0.07 3 0.0345 * 0.98 0.06 3  0.7262 ns 0.6 0.01 2 0.0006 ** 1.6 0.17 2 0.0717 ns At5g40820 ATR 0.93 0.76 2 0.9350 ns 1.06 0.1 3 0.5032 ns 1.09 0.06 2 0.2724 ns 1.18 0.07 2 0.1238 ns At1g16970 Ku70 1.04 0.06 3 0.5567 ns 1.04 0.04 3 0.5206 ns 1.4 0.12 3 0.0151 * 1.81 0.13 2 0.0248 * At1g48050 Ku80 0.9 0.07 2 0.1335 ns 1.09 0.05 3 0.1167 ns 0.79 0.08 2 0.1196 ns 2.15 0.06 2 0.0027 * DNA damage complex III At1g04020 BARD1 1.91 0.08 2 0.0076 * 2.05 0.13 2 0.0150 * n.a. 1.58 0.15 2 0.0608 ns At4g21070 BRCA1 2.09 0.09 3 0.0001 *** 2.08 0.09 3 0.0001 *** 1.65 0.39 4 0.0606 ns 0.88 0.11 2 0.3892 ns At4g00020 BRCA2a 0.72 0.02 2 0.0051 * 0.78 0.03 2 0.0181 * n.a. 0.69 0.09 2 0.0749 ns At5g01630 BRCA2b 0.48 0.3 2 0.2252 ns 0.89 0.39 3 0.8044 ns n.a. 1.03 0.09 2 0.7706 ns At1g64750 DSS1(I) 1.35 0.07 2 0.0377 * 1.04 0.08 2 0.6667 ns n.a. n.a. At5g45010 DSS1(V) 1.34 0.09 2 0.0635 ns 1.05 0.03 2 0.2375 ns n.a. n.a. MRN complex At5g54260 MRE11A 1.22 0.2 2 0.3860 ns 1.42 0.14 2 0.0955 ns n.a. n.a. At2g31970 RAD50 1.82 0.03 2 0.0013 * 2.40 0.03 2 0.0005 ** n.a. n.a. At3g02680 NBS1 1.45 0.11 2 0.0549 ns 1.85 0.00 2 0.0001 *** 0.52 0.11 2 0.0487 * n.a. RecA/RAD51 family At1g79050 RecA1 1.91 0.21 2 0.0493 * 2.18 0.03 2 0.0006 ** 1.26 0.13 2 0.1835 ns 1.24 0.18 2 0.3140 ns At2g19490 RecA2 2.47 0.09 2 0.0037 * 2.66 0.3 2 0.0311 * 1.02 0.13 2 0.8919 ns 0.77 0.08 2 0.1027 ns At3g10140 RecA3 2.02 0.11 2 0.0114 * 2.05 0.07 2 0.0044 * 1.1 0.08 2 0.3377 ns 0.98 0.08 2 0.8259 ns At3g32920 RecA4 1.36 0.02 2 0.0031 * 1.86 0.14 2 0.0255 * 1.19 0.13 2 0.2814 ns 1.43 0.04 2 0.0085 * At5g20850 RAD51 0.47 0.07 2 0.0170 * 0.79 0.17 2 0.3421 ns 1.47 0.43 4 0.1324 ns 0.44 0.05 2 0.0079 * At2g28560 RAD51B 3.05 0.4 2 0.0360 * 3.86 0.16 2 0.0031 * 1.87 0.16 2 0.0322 * 0.62 0.03 2 0.0062 * At2g45280 RAD51C 2.08 0.24 2 0.0460 * 2.60 0.28 2 0.0293 * n.a. 0.39 0.01 2 0.0003 ** At1g07745 RAD51D 1.73 0.05 2 0.0047 * 1.49 0.09 2 0.0321 * n.a. n.a. At3g22880 DMC 2.11 0.18 2 0.0253 * 1.56 0.04 2 0.0051 * n.a. 0.44 0.14 2 0.0572 ns At5g64520 XRCC2 0.80 0.08 2 0.1296 ns 0.83 0.02 2 0.0136 * n.a. n.a. At5g57450 XRCC3 7.96 1.25 3 0.0008 ** 6.20 1.7 3 0.0070 * 0.78 0.23 2 0.4398 ns 0.94 0.14 2 0.7100 ns MUS81-EME1 complex At4g30870 MUS81 1.79 0.29 2 0.1125 ns 1.85 0.11 2 0.0163 * n.a. 1.08 0.02 2 0.0572 ns At2g21800 EME1a 2.80 0.36 2 0.0377 * 3.21 0.06 2 0.0007 ** n.a. 2.35 0.15 2 0.0121 * At2g22140 EME1b 0.85 0.06 2 0.1296 ns 0.90 0.06 2 0.2375 ns n.a. n.a. Single strand DNA binding At3g18580 SSB 2.15 0.13 2 0.0125 * 2.31 0.13 2 0.0097 * n.a. 0.59 0.15 2 0.1118 ns At4g11060 MTSSB 2.00 0.21 2 0.0414 * 2.70 0.25 2 0.0209 * n.a. 1.61 0.11 2 0.0310 * Chromatin remodeling ATPases At5g61460 SMC6b 0.83 0.08 2 0.1675 ns 0.72 0.07 2 0.0572 ns n.a. 0.75 0.07 2 0.0702 ns At3g19210 RAD54 1.28 0.03 2 0.0113 * 2.02 0.16 2 0.0237 * n.a. n.a. DNA helicases At2g01440 RecG 2.01 0.12 2 0.0138 * 1.82 0.06 2 0.0053 * n.a. 1.71 0.16 2 0.0472 * At1g10930 RecQ4a 1.57 0.04 2 0.0049 * 1.66 0.11 2 0.0267 * 0.6 0.04 2 0.0099 * 0.66 0.07 2 0.0399 * At1g60930 RecQ4b 1.79 0.18 2 0.0482 * 1.83 0.19 2 0.0486 * n.a. 0.6 0.1 2 0.0572 ns DNA topoisomerases At5g63920 TOP3a 0.96 0.09 2 0.7002 ns 1.17 0.07 2 0.1358 ns n.a. 1.57 0.23 2 0.1315 ns At2g32000 TOP3b 1.78 0.1 2 0.0160 * 1.82 0.08 2 0.0094 * 0.96 0.05 2 0.5076 ns 0.51 0.14 2 0.0728 ns additional mtDNA repair genes At1g14410 WHY1 1.03 0.063562753 2 0.6667 ns 1.67 0.124696356 2 0.0306 * n.a. n.a. At1g71260 WHY2 1.66 0.128 2 0.0367 * 2.02 0.1084 2 0.0114 * n.a. n.a. At2g02740 WHY3 1.35 0.122093023 2 0.1002 ns 2.19 0.136434109 2 0.0136 * n.a. n.a. At3g24320 MSH1 1.43 0.179428571 2 0.1395 ns 1.67 0.140857143 2 0.0410 * n.a. n.a. At1g47720 OSB1 1.12 0.073743017 2 0.2286 ns 1.71 0.195530726 2 0.0710 ns n.a. n.a. At4g20010 OSB2 1.03 0.037875752 2 0.5315 ns 1.14 0.046092184 2 0.1074 ns n.a. n.a. At5g44785 OSB3 1.02 0.050505051 2 0.7278 ns 1.23 0.057828283 2 0.0618 ns n.a. n.a. At1g31010 OSB4 1.26 0.083278689 2 0.0831 ns 2.01 0.164918033 2 0.0242 * n.a. n.a. "Note1: values of more than 2-fold changes are highlighted; fold-change is calculated as a median of transcription levels relative to untreated Col-0 samples; SD - standard deviation; p-value, calculated using unpaired t-test (*, p < 0.05 ; **, p < 0.001; ***, p < 0.0001; ns, not significant); No. of samples - number of biological replicas analysed" "Note 2: italics, ATR and PARP in leaves, and ATM in seedlings showed Ct values >30"