#NEXUS [MacClade 4.08 registered to Test, test] BEGIN TAXA; DIMENSIONS NTAX=69; TAXLABELS hypothetical_ancestor Proganochelys '***Proterochersis' Palaeochersis '***Australochelys' Kayentachelys Meiolania Mongolochelys Kallokibotion Platychelys Caribemys Notoemys Elseya Chelodina Phrynops Ermnochelys Pelomedusa Podocnemis Dorsetochelys Pleurosternon Glyptops Dinochelys Neurankylus Trinitichelys Plesiobaena Boremys Baena Chisternon Portlandemys Plesiochelys Tropidemys Solnhofia Thalassemys Santanachelys Xinjianchelys Hangaiemys Judithemys Dracochelys Sinemys Ordosemys Toxochelys Caretta Chelonia Mesodermochelys Dermochelys Protochelydra Macroclemmys Chelydra Platysternon '***Mongolemys elegans' Go._polyphemus Chrysemys Geoclemmys Emarginachelys Baptemys Dermatemys Hoplochelys Staurotypus St._odoratus Kinosternon Zangerlia_neimongolensis Basilemys Adocus Peltochelys '***Sandownia' Ap._spinifera Lis._punctata Anosteria Carettochelys; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=137; FORMAT SYMBOLS= " 0 1 2 3" MISSING=? GAP=- ; CHARSTATELABELS 1 Na_A, 2 Na_B, 3 Na_C, 4 Pf_A, 5 Pf_B, 6 Pf_C, 7 '*Pf D', 8 Pf_E, 9 La_A, 10 Fr_A, 11 Pa_A, 12 Pa_B, 13 Pa_C, 14 Ju_A, 15 Ju_B, 16 Qj_A, 17 Qj_B, 18 Sq_A, 19 Sq_B, 20 Po_A, 21 St_A, 22 Pm_A, 23 Pm_B, 24 Pm_C, 25 Pm_D, 26 Pm_E, 27 '*Vo A', 28 Vo_B, 29 Vo_C, 30 Pal_A, 31 Qu_A, 32 Qu_B, 33 '*Qu C', 34 Qu_D, 35 '*Qu E', 36 Qu_F, 37 Epi_A, 38 Pt_A, 39 Pt_B, 40 Pt_C, 41 Pt_D, 42 Pt_E, 43 Pt_F, 44 Pt_G, 45 Pt_H, 46 So_A, 47 So_B, 48 Ex_A, 49 Op_A, 50 Bs_A, 51 Bs_B, 52 Hyoman, 53 Stap_A, 54 '*Stap B', 55 Jug_A, 56 Caro_A, 57 Peri_A, 58 Den_A, 59 Spl_A, 60 '*Cpx A', 61 '*Cpx B', 62 Nu_A, 63 Nu_B, 64 neural_A, 65 '*Per A', 66 Per_B, 67 Co_A, 68 '*Co B', 69 Co_C, 70 Cer_A, 71 '*SM A', 72 Ve_A, 73 Ve_B, 74 Ve_C, 75 Plas_A, 76 Plas_B, 77 Plas_C, 78 Ent_A, 79 Ent_B, 80 Ent_C, 81 Ent_D, 82 Ent_E, 83 Epi_A, 84 Hyo_A, 85 '*Mes A', 86 Hypo_A, 87 Xiphi_A, 88 Xiphi_B, 89 PS_A, 90 PS_B, 91 Gul_A, 92 ExGul_A, 93 ExGul_B, 94 ExGul_C, 95 IntGul_A, 96 Hum_A, 97 Pec_A, 98 '*Abd A', 99 An_A, 100 Infr_A, 101 CR_A, 102 CV_A, 103 CV_B, 104 CV_C, 105 CA_A, 106 CA_B, 107 CA_C, 108 CA_D, 109 CA_E, 110 CA_F, 111 CA_G, 112 CA_H, 113 DR_A, 114 DR_B, 115 DR_C, 116 DV_A, 117 Chev_A, 118 Cau_A, 119 Cau_B, 120 '*Cl A', 121 Sca_A, 122 Sca_B, 123 Sca_C, 124 Cor_A, 125 Pel_A, 126 Il_A, 127 Il_B, 128 Il_C, 129 Il_D, 130 Isch_A, 131 Hypois_A, 132 Man_A, 133 '*Man B', 134 '*Man C', 135 Pes_A, 136 Pes_B, 137 SolnhofiaBone ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 ] [ . . . . . . . . . . . . . ] hypothetical_ancestor 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000-------0000000000000000000000000 Proganochelys 000000000000-00000000000000000000000?00000000000000000000000000?000000000-0000000000000000000000000?00000-------00000000000000--000000000 '***Proterochersis' ???????????????????????????????????????????????????????????00???00??0?110?00000100000010000000000000???????????????????0?????1??00??????? Palaeochersis 00000?01000???00000000??00001?0?1001?0100000000?1?0?100????00????0??0?0?0?00000?00?0000000???0????0?0???0-------0????1?000?0?0??010000000 '***Australochelys' ???????10?0???00?0???0??00?0??001001??10000000??1?0?100?0???????????????????????????????????????????????????????????????????????????????? Kayentachelys 00001011110??10000001100001010012011?01000000000100?101000000000100000210000000100000000000001000000?00?0-------00000101100101--011?????0 Meiolania 000010011001010000101{01}0000101011201301111000{01}110100110130000000?100000210?1101010010?00000000100????00001001111100?000{23}1100101--01?000?00 Mongolochelys 0010100110010100001011000010101120110111000001101?0?10100000000010000021011101010010000000000100000000001011100100000131100101--0??100110 Kallokibotion 0010??011?01?1000000100000101011201301111??0??00100?1010?0?0000010000?21000001?100011100000001000000?0??0-------0???0?01??0?0?--????????? Platychelys ???????????????????????????????????????????????????????????00100100000110001011100011110001001000002?0??1???????10101???????110001??????0 Caribemys ???????????????????????????????????????????????????????????00100?0??0?2???01011?000111?00010010000?2?0??1????????0??????????1?10????????? Notoemys ??????????????????????????????2120???11?0??????01?0?1010???00100100000210001011?00011?1000???1?00002?0??100?????201?????????1?11???10011? Elseya 0110011111011101-20111000010102120231111010001001001101200000100100201211-000111000121100010010000021000100011012010111211111111011100110 Chelodina 0110011111111101-20111000010102120231111010000011001101201000100100200211-000111000120100010110000021000100011012010111211111111011100110 Phrynops 0110011111011101-201110000101021202311110100000110011012010001001001002111000111000121100010010000021000100011012010111211111111011100110 Ermnochelys 1--10101111111000101110000211021212311110100010010011010001001001001012111000111000111100010010000021000111111112010111211011111011100110 Pelomedusa 1--10101111111000301110000211021212311110100010010011012001001001001012111000111000111100010010000021000111111112010111211011111011100110 Podocnemis 1--10101111111000101110000211021212311110100110010011010001001001001012111000111000111100010010000021000111111112010111211111111011100110 Dorsetochelys 001010011101?1000000110000101?1120110111100000001?001011????????????????????????????????????????????????????????????????????????????????? Pleurosternon 0110??1111011100000?1100001?10112011011110010000100010111??00?0010000021010001??000?0?00001001000000?0??0-------0????????????1??0???????0 Glyptops 01101?1111?11100????110?011?101120?10111100100??10001011?0000100100000211100011100010100000001000000?0000-------0010???1111101--011?????0 Dinochelys 0?10??1111???10000???10?01??????20?1?????????????0??101??0?00??01000002101000111000?0?000000010000{01}010??0-------0?1??1?1???????????100110 Neurankylus ???0??11?1?11?????001?????????1120{12}1111110?0?000100010111?0001001000002111000111000101?0000001000000????????????101?????????0?--????????0 Trinitichelys 0010102111111100000011000010101120?11111100000001000101110000100?00?002111000111000101?00000010000?0?0000-------??10????????????????????0 Plesiobaena 0010102111111100000011000010101120?1111110000000100010111000010010000021110001110001010000002100001010001???11111010010?111101--011100110 Boremys 00101021111111000000110000101011201111111000100010001011100001001000022111000111000101?00000210000?010000-------10100122????0?--????????0 Baena 1??0102111011100000011000010101120?11111100000001000101110100100100002211100011100011100000021000010????????????1010???2????0?--011?????0 Chisternon 0010102111011100000011000010101120111111100010001000101110100100100002211-00011100010100000021000010?000100111111010012?111101--?11?????0 Portlandemys 0011100111?10??????011000010101120{12}101111000010010001013000?????????????????????????????????????????????????????????????????????????????? Plesiochelys 0011100111{01}101000000110000101011201101111010-100100010130000010010000221010{01}011100012100000001000000????????????2010????111101--011100110 Tropidemys ???????????????????????????????????????????????????????????00100100002211{01}0{01}0??????121??000????00000????????????201?????????????????????{01} Solnhofia 0011100111{01}101000?0011000011101120110111100001001000101300000??01?00002101110???0000200000?????00000110?0-------??1??10?11110?--?11100111 Thalassemys 00101011110111000000110000111011201101111010-000100010130??00100?00?0?2?0??10??????12???00?????000?011??0-------1???????????????????????0 Santanachelys 00101001111101000000110?001110112011?1111010-1001?001013?0?00?00100010210011011100002000?0??????????11??????????0?1?????11?10?--011110110 Xinjianchelys ??????????????????????????????1????????1??????????1????????00100100000211110011100002000000001000010?1000-------20100131111101--011?????0 Hangaiemys 001110011101110000001100001010112?{12}1?111100101001?101013???001001000002111100111001020000001-10000{01}0111?100111112?10????????????????????0 Judithemys ???1??0111?111000?0011???0101?1120{12}1?1111000010010101013?0?001001000002111100111001020000001-10000{01}0111?100111112?10113?11?101--011100110 Dracochelys ???11?01111111000?0?110000101?1121{12}1?111100001001??01013??????????????????1???????1?????0???????????????????????????????????????????????0 Sinemys 0010??1111111100030?11??00??1?112122?111000001001?10101300?0010010000121111{01}?11100-0200000???1?000?0???0????????0????1?????????????100110 Ordosemys 0010100111?111000000110000101011211101111000010010101013???00100100000211111????00?0200000???1?0001011?01?01??010?10113?111101--011?????0 Toxochelys 001110011111?10000001100001010112011?1111000010010001013?010020010001021111101110010200100???1?0?01011?110011111?010011?11110?--011110110 Caretta 1--110011{01}0101000000110100101011201101111020-10011001013001002000000102111110111001020010001-110000011111001111120111112111101--011120110 Chelonia 1--1?001110101000000110101101011201101111020-10011001013001002001000102111110111001020010001-11000001111100111112011111211110?--011120110 Mesodermochelys ?????????????????????????????????????????????10??????????011020010001?2???11011100102001?0??????????11101???????20101112111101--011?????? Dermochelys 1--111011000-0000000110000101011201111111020-10011001013001202003-0-1-2---11-1110010200110---1------11111001111120-01112111101--011120110 Protochelydra 1--11?01101111000000110000101?112022?111100011001?0010130???????????0?????1001110010200000?1-1000110???????????????????2110101--0???????0 Macroclemmys 1--1100110111100000011000110101120220111100?110010001013001001101000001111110111001020000001-100011011111001111120110132110101--011100110 Chelydra 1--11001101111000000110001101011202201111000110010001013001001101000002111110111001020000001-100011011111001111120110132110101--011100110 Platysternon 1--11001101111001000110001101011201201111000110010001013001001001000002111100111000020100001-100000011111001110120110132110101--011100110 '***Mongolemys elegans' 1--{01}1001111111000000110000101011202101111000010?10001013001001001000002111000111000121100001-1000000????100111012?1101?2110101--011100??0 Go._polyphemus 1--11001111111000300110000101011202201111000110010001013001001001000002111000111000121100001-100000111111001110120111112110101--011000110 Chrysemys 1--11001111111000300110000101011202101110000110010001013001001001000002111000111000121100001-100000111111001110120111112110101--011100110 Geoclemmys 1--11001101111100300110000101011202101111000110010001013001011001000002111000111000121100001-100000111111001110120111112110101--011100110 Emarginachelys 1--1100111111100030011000010111120{12}101111000110010001013???0111010000?2111100111000020000001-100??0011??10011111??1?????110101--011100110 Baptemys 1--11001111111000300110000101111202101111000{01}1001?00-213001011001000002111000111000121000001-10010001111101111112?111132110101--111100110 Dermatemys 1--110011{01}111100030011000010111120210111100011001000-213001001{01}01001002111000111000120100001-110100011111111111120111112110101--011100110 Hoplochelys ????????????????????????????????????????????????????????0??021101000002111000111000020000001-1001100????????????201????2??010?--????????0 Staurotypus 1--1100110111110130011000110111120210111100011001000111300102110210{01}002111001111000020000001-10012001111101111112111111211010?--111100110 St._odoratus 1--11001101111001300110000101111202101111000110010001113001011102111002111001111?10020000001-111120011111011111121111112110101--111100110 Kinosternon 1--11001101111001300110000101111202101111000110010001113001011102111002111001111?10020000001-11112001111101111112111111211010?--111100110 Zangerlia_neimongolensis 1--11?0110?1?1?003001100001?1?1120{12}2?111100001001?001013?0100??11??00?211?000111000020000100210000001111100000012??1????110101--011000?10 Basilemys 1--1??01111??1000300110?00??1??12022?111?0??????1????????0100101100{01}002111000111000020000100{02}100000011111000000????????211?101--011000??0 Adocus 1--11001111111?00300110000101111202101111000110010001013001001011001002111000111000020000100010000001111100000002?11???2110101--011100110 Peltochelys ???????????????????????????????????????????????????????????0010020010?211000011100002000001001000000????????????????????????????????????0 '***Sandownia' 1--1100111011100000011{01}?0011111120{12}211111010-00010001013001?????????????????????????????????????????????????????????????????????????????? Ap._spinifera 1--11101111111100300111210111111201201111001110010001013001201003-01--2---11-11110-0200-1----1------110110000002201-1112110101--011101110 Lis._punctata 1--11101111111100300111210111111201201111001110010001013001201003-01--2---11-11110-0200-1----1------110110000002201-1112110101--011101110 Anosteria 1--1??01111??100030011?200111?112022?1111001{01}1001?0010130??10100200100211?10-111000020001----1------????????????????????11??0?--?11102110 Carettochelys 1--111011111110013001112001111112022011110011100100010130011010020010-2---10-111000020001----1------11011000000120111112110101--011102110 ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; END; BEGIN TREES; TRANSLATE 1 hypothetical_ancestor, 2 Proganochelys, 3 '***Proterochersis', 4 Palaeochersis, 5 '***Australochelys', 6 Kayentachelys, 7 Meiolania, 8 Mongolochelys, 9 Kallokibotion, 10 Platychelys, 11 Caribemys, 12 Notoemys, 13 Elseya, 14 Chelodina, 15 Phrynops, 16 Ermnochelys, 17 Pelomedusa, 18 Podocnemis, 19 Dorsetochelys, 20 Pleurosternon, 21 Glyptops, 22 Dinochelys, 23 Neurankylus, 24 Trinitichelys, 25 Plesiobaena, 26 Boremys, 27 Baena, 28 Chisternon, 29 Portlandemys, 30 Plesiochelys, 31 Tropidemys, 32 Solnhofia, 33 Thalassemys, 34 Santanachelys, 35 Xinjianchelys, 36 Hangaiemys, 37 Judithemys, 38 Dracochelys, 39 Sinemys, 40 Ordosemys, 41 Toxochelys, 42 Caretta, 43 Chelonia, 44 Mesodermochelys, 45 Dermochelys, 46 Protochelydra, 47 Macroclemmys, 48 Chelydra, 49 Platysternon, 50 '***Mongolemys elegans', 51 Go._polyphemus, 52 Chrysemys, 53 Geoclemmys, 54 Emarginachelys, 55 Baptemys, 56 Dermatemys, 57 Hoplochelys, 58 Staurotypus, 59 St._odoratus, 60 Kinosternon, 61 Zangerlia_neimongolensis, 62 Basilemys, 63 Adocus, 64 Peltochelys, 65 '***Sandownia', 66 Ap._spinifera, 67 Lis._punctata, 68 Anosteria, 69 Carettochelys ; TREE UNTITLED = [&R] (2,(4,(5,(3,(6,(9,((20,(21,22)),(24,((25,27,28),((7,8),((10,(11,(12,(((13,14),15),((16,17),18))))),(30,(((32,(35,37)),(((((63,(55,(59,56))),((51,53),52)),(48,49)),(45,((66,67),69))),42)),39,40))))))))))))); TREE MajRule = [&R] (2,3,4,5,(6,((7,8),(9,(((((10,(11,(12,((13,(14,15)),((16,17),18))))),(((32,34),(35,((39,40),((((37,((54,55),((63,((66,67),69)),((58,(59,60)),56)),((51,53),52))),((57,(47,48)),49)),((42,43),45)),41)))),33)),30),((24,(25,(27,(28,26)))),23)),(20,(21,22))))))); TREE MajRule = [&R] (2,3,4,5,(6,((7,8),(9,(((((10,(11,(12,((13,(14,15)),((16,17),18))))),(((32,34),(35,((39,40),((((37,((54,55),((63,((66,67),69)),((58,(59,60)),56)),((51,53),52))),((57,(47,48)),49)),((42,43),45)),41)))),33)),30),((24,(25,(27,(28,26)))),23)),(20,(21,22))))))); TREE MajRule = [&R] (2,3,4,5,(6,((7,8),(9,(((((10,(11,(12,((13,(14,15)),((16,17),18))))),(((32,34),(35,((39,40),((((37,((54,55),((63,((66,67),69)),((58,(59,60)),56)),((51,53),52))),((57,(47,48)),49)),((42,43),45)),41)))),33)),30),((24,(25,(27,(28,26)))),23)),(20,(21,22))))))); TREE MajRule = [&R] (1,2,(3,4,5,(6,((7,8),(9,((10,(11,(12,((13,(14,15)),((16,17),18))))),(((20,(21,22)),((24,(25,((27,28),26))),23)),19),(29,30,(32,(33,34)),(35,(((((39,40),38),37),((((((54,((55,56),(57,(58,(59,60))))),(((61,62),63),(((66,67),(69,68)),64,65))),((51,52,53),50)),49),((47,48),46)),(((42,43),(45,44)),41))),36))))))))); TREE MajRule = [&R] (1,2,(3,4,5,(6,((7,8),(9,((10,(11,(12,((13,(14,15)),((16,17),18))))),(((20,(21,22)),((24,(25,((27,28),26))),23)),19),(29,30,(32,(33,34)),(35,(((((39,40),38),37),((((((54,((55,56),(57,(58,(59,60))))),(((61,62),63),(((66,67),(69,68)),64,65))),((51,52,53),50)),49),((47,48),46)),(((42,43),(45,44)),41))),36))))))))); TREE * MajRule = [&R] (1,2,(3,4,5,(6,((7,8),(9,((10,(11,(12,((13,(14,15)),((16,17),18))))),(((20,(21,22)),((24,(25,((27,28),26))),23)),19),(29,30,(32,(33,34)),(35,(((((39,40),38),37),((((((54,((55,56),(57,(58,(59,60))))),(((61,62),63),(((66,67),(69,68)),64,65))),((51,52,53),50)),49),((47,48),46)),(((42,43),(45,44)),41))),36))))))))); END; BEGIN NOTES; TEXT TAXON=30 CHARACTER=113 TEXT= changed_from_0_to_2; END; BEGIN MacClade; Version 4.0 87; LastModified -865292747; FileSettings editor '1' '1' '126' '0'; Singles 000; Editor 00011001111111100100010010 '0' '24' Geneva '9' '100' '1' all; EditorPosition '44' '6' '723' '1227'; TreeWindowPosition '46' '6' '743' '974'; ListWindow Characters closed Geneva '9' '50' '10' '129' '359' 000; ListWindow Taxa closed Geneva '9' '50' '10' '225' '290' 100000000; ListWindow Trees closed Geneva '9' '587' '13' '129' '379' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '129' '181' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; 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